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Original Articles in Peer-Reviewed Journals |
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Title
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Author(s)
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Journal
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Pub.
Year |
| Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes.
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Greenbaum, J., Sidney, J., Chung, J., Brander, C., Peters, B., and Sette, A. |
Immunogenetics. | 2011 |
| A model for collaborative curation, the IEDB and CHEBI curation of non-peptidic epitopes. |
Vita, R.J., Peters, B., Josephs, Z., de Matos, R., Ennis, M., Turner, S., Steinbeck, C., Seymour, E., Zarebski, L., and Sette, A. | Immunome Res. | 2011 |
| Functional analysis of frequently expressed Chinese rhesus macaque MHC class I molecules Mamu-A*02601 and Mamu-B*08301 reveal HLA-A2 and HLA-A3 supertypic specificities. |
Southwood, S., Solomon, C., Hoof, I., Rudersdorf, R., Sidney, J., Peters, B., Wahl, A., Hawkins, O., Hildebrand, W., Mothe, B.R., and Sette, A. | Immunogenics. |
2010 |
| Divergent motifs but overlapping binding repertoires of six HLA-DQ
molecules frequently expressed in the worldwide human population. |
Sidney J, Steen A, Moore C, Ngo S, Chung J, Peters B, Sette A. | J Immunol. |
2010 |
| Molecular determinants of T cell epitope recognition to the common Timothy grass allergen. |
Oseroff C, Sidney J, Kotturi MF, Kolla R, Alam R, Broide DH, Wasserman SI, Weiskopf D, McKinney DM, Chung JL, Petersen A, Grey H, Peters B, Sette A.
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J Immunol. | 2010 |
| The most common Chinese rhesus macaque MHC class I molecule shares peptide binding repertoire with the HLA-B7 supertype. |
Solomon C, Southwood S, Hoof I, Rudersdorf R, Peters B, Sidney J, Pinilla C, Marcondes MC, Ling B, Marx P, Sette A, Mothé BR. | Immunogenetics. | 2010 |
| Polyfunctional CD4+ T cell responses to a set of pathogenic arenaviruses provide broad population coverage. |
Kotturi MF, Botten J, Maybeno M, Sidney J, Glenn J, Bui HH, Oseroff C, Crotty S, Peters B, Grey H, Altmann DM, Buchmeier MJ, Sette A. | Immunome Res. | 2010 |
| Identification of broad binding class I HLA supertype epitopes to provide universal coverage of influenza A virus. |
Alexander J, Bilsel P, del Guercio MF, Marinkovic-Petrovic A, Southwood S, Stewart S, Ishioka G, Kotturi MF, Botten J, Sidney J, Newman M, Sette A. | Hum Immunol. | 2010 |
| Design and utilization of epitope-based databases and predictive tools. |
Salimi N, Fleri W, Peters B, Sette A. | Immunogenetics. | 2010 |
| TiArA: a virtual appliance for the analysis of Tiling Array data. |
Greenbaum JA, Assarsson E, Chung JL, Head S, Sette A, Peters B. | PLoS One. | 2010 |
| Five HLA-DP molecules frequently expressed in the worldwide human population share a common HLA supertypic binding specificity. |
Sidney J, Steen A, Moore C, Ngo S, Chung J, Peters B, Sette A. | J Immunol. | 2010 |
| Uncovering the interplay between CD8, CD4 and antibody responses to complex pathogens. |
Moutaftsi M, Tscharke DC, Vaughan K, Koelle DM, Stern L, Calvo-Calle M, Ennis F, Terajima M, Sutter G, Crotty S, Drexler I, Franchini G, Yewdell JW, Head SR, Blum J, Peters B, Sette A. | Future Microbiol. | 2010 |
| Mycobacterial ESAT-6 and katG are recognized by sarcoidosis CD4+ T cells when presented by the American sarcoidosis susceptibility allele, DRB1*1101. |
Oswald-Richter K, Sato H, Hajizadeh R, Shepherd BE, Sidney J, Sette A, Newman LS, Drake WP. | J Clin Immunol. | 2010 |
| Universal influenza DNA vaccine encoding conserved CD4+ T cell epitopes protects against lethal viral challenge in HLA-DR transgenic mice. |
Alexander J, Bilsel P, del Guercio MF, Stewart S, Marinkovic-Petrovic A, Southwood S, Crimi C, Vang L, Walker L, Ishioka G, Chitnis V, Sette A, Assarsson E, Hannaman D, Botten J, Newman MJ. | Vaccine. | 2010 |
| The immune epitope database 2.0. |
Vita R, Zarebski L, Greenbaum JA, Emami H, Hoof I, Salimi N, Damle R, Sette A, Peters B. | Nucleic Acids Res. | 2010 |
| Definition of epitopes and antigens recognized by vaccinia specific immune responses: their conservation in variola virus sequences, and use as a model system to study complex pathogens. |
Sette A, Grey H, Oseroff C, Peters B, Moutaftsi M, Crotty S, Assarsson E, Greenbaum J, Kim Y, Kolla R, Tscharke D, Koelle D, Johnson RP, Blum J, Head S, Sidney J. | Vaccine. | 2009 |
| The smallpox vaccine induces an early neutralizing IgM response. |
Moyron-Quiroz JE, McCausland MM, Kageyama R, Sette A, Crotty S. | Vaccine. | 2009 |
| A multivalent and cross-protective vaccine strategy against arenaviruses associated with human disease. |
Kotturi MF, Botten J, Sidney J, Bui HH, Giancola L, Maybeno M, Babin J, Oseroff C, Pasquetto V, Greenbaum JA, Peters B, Ting J, Do D, Vang L, Alexander J, Grey H, Buchmeier MJ, Sette A. | PLoS Pathog. | 2009 |
| Pre-existing immunity against swine-origin H1N1 influenza viruses in the general human population. |
Greenbaum JA, Kotturi MF, Kim Y, Oseroff C, Vaughan K, Salimi N, Vita R, Ponomarenko J, Scheuermann RH, Sette A, Peters B. | Proc Nat Acad Sci USA. | 2009 |
| Design and preclinical development of a recombinant protein and DNA plasmid mixed format vaccine to deliver HIV-derived T-lymphocyte epitopes. |
Walker LE, Vang L, Shen X, Livingston BD, Post P, Sette A, Godin CS, Newman MJ. | Vaccine. | 2009 |
| P17-24. Interfering overlapping epitopes contribute to the subdominance of an HLA-A2-restricted HIV Gag-specific epitope. |
Kan-Mitchell J, Nyakeriga AM, Salkowitz JR, Costanzo MC, Sidney J, Sette A, Ayyavoo V. | J Immunol. |
2009 |
| Quantitating T cell cross-reactivity for unrelated peptide antigens. |
Ishizuka J, Grebe K, Shenderov E, Peters B, Chen Q, Peng Y, Wang L, Dong T, Pasquetto V, Oseroff C, Sidney J, Hickman H, Cerundolo V, Sette A, Bennink JR, McMichael A, Yewdell JW. | J Immunol. | 2009 |
| Classification of the universe of immune epitope literature: representation and knowledge gaps. |
Davies V, Vaughan K, Damle R, Peters B, Sette A. | PLoS One. | 2009 |
| Diverse recognition of conserved orthopoxvirus CD8+ T cell epitopes in vaccinated rhesus macaques. |
Walsh SR, Gillis J, Peters B, Mothé BR, Sidney J, Sette A, Johnson RP. | Vaccine. |
2009 |
| Cellular immune response to cryptic epitopes during therapeutic gene transfer. | Li C, Goudy K, Hirsch M, Asokan A, Fan Y, Alexander J, Sun J, Monahan P, Seiber D, Sidney J, Sette A, Tisch R, Frelinger J, Samulski RJ. | Proc Natl Acad Sci USA. | 2009 |
| Of mice and humans: how good are HLA transgenic mice as a model of human immune responses? |
Kotturi MF, Assarsson E, Peters B, Grey H, Oseroff C, Pasquetto V, Sette A. | Immunome Res. | 2009 |
| Two MHC class I molecules associated with elite control of immunodeficiency virus replication, Mamu-B*08 and HLA-B*2705, bind peptides with sequence similarity. |
Loffredo JT, Sidney J, Bean AT, Beal DR, Bardet W, Wahl A, Hawkins OE, Piaskowski S, Wilson NA, Hildebrand WH, Watkins DI, Sette A. | J Immunol. | 2009 |
| Herpes simplex virus type 2 tegument proteins contain subdominant T-cell epitopes detectable in BALB/c mice after DNA immunization and infection. |
Muller WJ, Dong L, Vilalta A, Byrd B, Wilhelm KM, McClurkan CL, Margalith M, Liu C, Kaslow D, Sidney J, Sette A, Koelle DM. | J Gen Virol. | 2009 |
| A protective role for dengue virus-specific CD8+ T cells. | Yauch LE, Zellweger RM, Kotturi MF, Qutubuddin A, Sidney J, Peters B, Prestwood TR, Sette A, Shresta S. | J Immunol. | 2009 |
| Intestinal T cell responses to gluten peptides are largely heterogeneous: implications for a peptide-based therapy in celiac disease. |
Camarca A, Anderson RP, Mamone G, Fierro O, Facchiano A, Costantini S, Zanzi D, Sidney J, Auricchio S, Sette A, Troncone R, Gianfrani C. | J Immunol. | 2009 |
| Correlates of protection efficacy induced by vaccinia
virus-specific CD8(+) T-cell epitopes in the murine intranasal challenge
model. |
Moutaftsi M, Salek-Ardakani S, Croft M, Peters B, Sidney J, Grey H,
Sette A. |
Eur J Immunol. |
2009 |
| Preferential use of B7.2 and not B7.1 in priming of vaccinia virus-specific CD8 T cells. |
Salek-Ardakani S, Arens R, Flynn R, Sette A, Schoenberger SP, Croft M. | J Immunol. | 2009 |
| Vaughan K, Blythe M, Greenbaum J, Zhang Q, Peters B, Doolan DL, Sette A. |
Parasite Immunol. | 2009 |
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| NetMHCpan, A method for MHC class I binding prediction beyond humans. |
Hoof I, Peters B, Sidney J, Pedersen LE, Sette A, Lund O, Buus S, Nielsen M. | Immunogenetics. | 2009 |
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HLA class I supertypes: a revised and updated classification. |
Sidney J, Peters B, Frahm N, Brander C, Sette A. | BMC Immunol. | 2008 |
| Selective CD4+ T cell help for antibody responses to a large viral pathogen: deterministic linkage of specificities. | Sette A, Moutaftsi M, Moyron-Quiroz J, McCausland MM, Davies DH, Johnston RJ, Peters B, Rafii-El-Idrissi Benhnia M, Hoffmann J, Su HP, Singh K, Garboczi DN, Head S, Grey H, Felgner PL, Crotty S. | Immunity |
2008 |
| Oseroff C, Peters B, Pasquetto V, Moutaftsi M, Sidney J, Panchanathan V, Tscharke DC, Maillere B, Grey H, Sette A. | J Immunol. | 2008 |
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| Dow C, Oseroff C, Peters B, Nance-Sotelo C, Sidney J, Buchmeier M, Sette A, Mothé BR. | J Virol. | 2008 |
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Lymphocytic choriomeningitis virus infection yields overlapping CD4+ and CD8+ T-cell responses. |
Dow C, Oseroff C, Peters B, Nance-Sotelo C, Sidney J, Buchmeier M, Sette A, Mothé BR. | J Virol. |
2008 |
| Kinetic analysis of a complete poxvirus transcriptome reveals an immediate-early class of genes. |
Assarsson E, Greenbaum JA, Sundström M, Schaffer L, Hammond JA, Pasquetto V, Oseroff C, Hendrickson RC, Lefkowitz EJ, Tscharke DC, Sidney J, Grey HM, Head SR, Peters B, Sette A. | Proc Natl Acad Sci U S A. | 2008 |
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Immunomic Analysis of the Repertoire of T cell Specificities for Influenza A Virus in Humans.
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Assarsson E, Bui HH, Sidney J, Zhang Q, Glenn J, Oseroff C, Mbawuike IN, Alexander J, Newman MJ, Grey H, Sette A. | J Virol. |
2008 |
| Sidney J, Peters B, Moore C, Pencille TJ, Ngo S, Masterman KA, Asabe S, Pinilla C, Chisari FV, Sette A. | Immunogenetics. | 2007 |
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Immune epitope mapping in the post-genomic era: lessons for vaccine development.
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Sette A, Peters B. | Curr Opin Immunol. | 2007 |
| Cross-presentation of caspase-cleaved apoptotic self antigens in HIV infection. | Rawson PM, Molette C, Videtta M, Altieri L, Franceschini D, Donato T, Finocchi L, Propato A, Paroli M, Meloni F, Mastroianni CM, d'Ettorre G, Sidney J, Sette A, Barnaba V. | Nat Med. | 2007 |
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Integrating epitope data into the emerging web of biomedical knowledge resources.
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Peters B, Sette A. | Nat Rev Immunol. | 2007 |
| Moutaftsi M, Bui HH, Peters B, Sidney J, Salek-Ardakani S, Oseroff C, Pasquetto V, Crotty S, Croft M, Lefkowitz EJ, Grey H, Sette A. | J Immunol. | 2007 |
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| Mothé BR, Stewart BS, Oseroff C, Bui HH, Stogiera S, Garcia Z, Dow C, Rodriguez-Carreno MP, Kotturi M, Pasquetto V, Botten J, Crotty S, Janssen E, Buchmeier MJ, Sette A. | J Immunol. | 2007 |
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| Kotturi MF, Peters B, Buendia-Laysa F Jr, Sidney J, Oseroff C, Botten J, Grey H, Buchmeier MJ, Sette A. | J Virol. | 2007 |
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Ab and T cell epitopes of influenza A virus, knowledge and opportunities. |
Bui HH, Peters B, Assarsson E, Mbawuike I, Sette A. | Proc Natl Acad Sci U S A. | 2007 |
| Assarsson E, Sidney J, Oseroff C, Pasquetto V, Bui HH, Frahm N, Brander C, Peters B, Grey H, Sette A. | J Immunol. |
2007 |
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A community resource benchmarking predictions of peptide binding to MHC-I molecules. |
Peters B, Bui HH, Frankild S, Nielson M, Lundegaard C, Kostem E, Basch D, Lamberth K, Harndahl M, Fleri W, Wilson SS, Sidney J, Lund O, Buus S, Sette A. | PLoS Comput Biol. | 2006 |
| A consensus epitope prediction approach identifies the breadth of murine T(CD8+)-cell responses to vaccinia virus. | Moutaftsi M, Peters B, Pasquetto V, Tscharke DC, Sidney J, Bui HH, Grey H, Sette A. | Nat Biotechnol. | 2006 |